PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024477.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YC
Protein Properties Length: 118aa    MW: 12933.9 Da    PI: 6.9431
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024477.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1116.7e-35221021998
        NF-YC  19 helPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                  h+lPlarikki+k + +dvkmis eaP+++skacelfi +lt rsw+ + + krrtl+k d+a+av  tdifdflv+ v +
  CCG024477.1  22 HSLPLARIKKIMKkSGDDVKMISGEAPIVFSKACELFIEDLTQRSWMMTMQGKRRTLHKEDVASAVIGTDIFDFLVNLVSH 102
                  99**********825689**********************************************************99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.44E-261896IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.5E-311887IPR009072Histone-fold
PfamPF008082.8E-212387IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MRQAGTYSGI LSGGLSGKTG PHSLPLARIK KIMKKSGDDV KMISGEAPIV FSKACELFIE  60
DLTQRSWMMT MQGKRRTLHK EDVASAVIGT DIFDFLVNLV SHSSHSMDDS VEIETTCE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C2e-262210040117HapE
4g92_C2e-262210040117HapE
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029231.12e-83PREDICTED: nuclear transcription factor Y subunit C-3-like
SwissprotQ9ZVL31e-32NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBLB9GKK33e-79B9GKK3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s09100.19e-79(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105592841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.35e-33nuclear factor Y, subunit C3